We provide the first evidence of the impact of 9/11 on outcomes for Muslims in the US criminal justice system. We focus on parole outcomes of Muslim men in the state of Georgia, and find large post-9/11 declines in the likelihood of being granted parole and a subsequent 23% relative increase in prison time for Muslim inmates. These impacts persisted for several years after 9/11 and were larger for inmates with higher levels of recidivism risk. We argue that these effects reflect unwarranted disparities driven by the decision-making of parole board members post-9/11.